Introduction
MOM is a high performance short read mapping tool designed to better handle the higher frequency of sequencing errors near the 3' and 5' ends of Illumina reads. Specific details on the algorithm can be found in our paper in Oxford University Press Bioinformatics.
MOM 0.4 Version released
Wed, 10/21/2009 - 11:45 — AdministratorVersion 0.4 of MOM has been released. The download links are below.This version improves performance when using a large number of small reference sequences and introduces a paired read matching mode.
MOM version 0.2 released
Thu, 04/02/2009 - 16:22 — AdministratorAfter a long wait and much testing, MOM version 0.2 is finally available for download. This release adds RNA support, and support for lowercase Fasta files. In addition, there are some minor bugfixes and performance enhancements to the core code.
We expect to release our paired read implementation soon, so please check back in the next few weeks for the new version.
As always, please provide feedback or help requests directly to me, the author. (hleaves@vcu.edu).
Test Data Available
The test data from our forthcoming bioinformatics paper is available for download. All four datasets used in the paper are available.
MOM Version 0.1 Released
Mon, 09/15/2008 - 07:16 — Hugh EavesMOM Version 0.1 is available for download. Although we have extensively tested our software, please consider this to be a beta quality release. We are still working to improve the performance and reduce the memory usage of MOM, and will be adding several new features in the next release.
Pardon our dust!
Fri, 09/12/2008 - 19:28 — Hugh EavesPlease bear with us while we work to put together the website for MOM. We currently have some basic documentation and downloads, and will be adding more content over the next couple of weeks.
